Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs10475365 chr5:7317421 A/G 9.46E-9 490 30.9 31.12 10.07 KM Plot
PRAD rs10475366 chr5:7318909 G/A 9.46E-9 490 30.9 31.12 10.07 KM Plot
PRAD rs10489350 chr1:241993831 T/C 1.83E-5 489 30.8 31.4 28.6 KM Plot
PRAD rs10491653 chr9:72978218 T/C 1.81E-5 491 30.8 31.4 22.45 KM Plot
PRAD rs10497379 chr2:172932310 T/C 1.81E-5 482 30.8 31.2 30.8 KM Plot
PRAD rs10497483 chr2:178805401 T/C 4.14E-5 494 30.78 32.28 20.48 KM Plot
PRAD rs10498755 chr6:43330756 C/T 5.07E-10 485 31.27 28.57 44.3 KM Plot
PRAD rs1050293 chr17:37819457 G/A 5.4E-6 493 30.8 33.05 28.63 KM Plot
PRAD rs10503361 chr8:6816452 C/G 2.21E-5 494 29.17 28.97 31.37 KM Plot
PRAD rs10520565 chr15:83255074 C/T 3.74E-8 483 30.93 31.02 29.08 KM Plot
PRAD rs10550423 chr9:33945176 GAT/G 0.000128 487 30.78 33.25 21.2 KM Plot
PRAD rs10597983 chr17:79634062 CTG/C 4.34E-5 489 30.78 31.32 25.67 KM Plot
PRAD rs10631114 chr8:54178314 A/AAC 2.73E-6 492 31.32 26.93 49.93 KM Plot
PRAD rs10645383 chr11:22694361 A/ATTT 1.97E-5 485 30.53 33.05 22.27 KM Plot
PRAD rs10711325 chr19:53149055 GC/G 1.37E-8 491 30.8 31.03 26.13 KM Plot